STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0088Peptidase M50 family protein. (554 aa)    
Predicted Functional Partners:
MCP_2939
Di-trans-poly-cis-decaprenylcistransferase family protein.
 
  
 0.705
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
 
  
 0.698
MCP_0003
Conserved hypothetical protein.
 
  
 0.669
MCP_0048
Conserved hypothetical protein.
 
  
 0.651
MCP_2705
Putative oligosaccharyl transferase.
 
     0.634
MCP_2999
Putative signal sequence peptidase.
 
  
 0.634
MCP_0086
Conserved hypothetical protein; Belongs to the Predicted nucleotidyltransferase family (IPR009185).
       0.624
MCP_0087
CutA homolog.
       0.624
MCP_2849
Putative single-stranded DNA-binding replication protein.
  
   
 0.624
MCP_1516
Archaeosine tRNA-ribosyltransferase.
 
    0.589
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.