STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0090Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0004 family (IPR005839); Contains one Cobalamin vitamin B12-binding domain (IPR006158).; Contains one Elongator protein 3/MiaB/NifB domain (IPR006638).; Contains one Radical SAM domain (IPR007197). (370 aa)    
Predicted Functional Partners:
MCP_0329
Putative transcriptional regulator.
  
  
 0.712
MCP_2753
Putative transcriptional regulator.
  
  
 0.712
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
 
     0.606
MCP_2309
Belongs to the Uncharacterised conserved protein UCP004966 family (IPR012016); Contains one Protein of unknown function DUF126 domain (IPR002840).
       0.582
MCP_2308
Conserved hypothetical protein; Contains one Protein of unknown function DUF521 domain(s) (IPR007506).
       0.575
MCP_1907
Carboxylyase.
       0.553
dnaG
Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
       0.529
MCP_2310
Peptidase M50 family protein.
       0.529
MCP_0089
Hypothetical protein.
       0.517
pycA
Putative pyruvate carboxylase subunit A.
  
    0.488
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.