STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0101Conserved hypothetical protein; Belongs to the HesB/YadR/YfhF family (IPR000361). (104 aa)    
Predicted Functional Partners:
MCP_0409
Putative iron sulfur cluster assembly protein.
  
  
 0.945
MCP_0410
Putative ABC transporter; Belongs to the SufBD family (IPR000825).
  
 
 0.858
MCP_0411
ABC transporter ATP binding protein.
  
 
 0.810
iscS-2
Probable cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
 
  
 0.790
iscS-1
Probable cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
  
 0.763
MCP_1142
Hypothetical protein; Contains at least one PBS lyase HEAT-like repeat (IPR004155).
   
 
 0.742
MCP_1681
Hypothetical protein; Contains at least two PBS lyase HEAT-like repeats (IPR004155).
   
 
 0.742
MCP_2031
Conserved hypothetical protein; Contains at least PBS lyase HEAT-like repeat (IPR004155).
   
 
 0.742
MCP_2050
Conserved hypothetical protein.
   
 
 0.742
MCP_2755
Hypothetical protein; Contains at least one PBS lyase HEAT-like repeatrepeat (IPR004155).
   
 
 0.742
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.