STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0134Conserved hypothetical protein; Belongs to the Protein of unknown function DUF375family (IPR007183). (237 aa)    
Predicted Functional Partners:
MCP_0132
Conserved hypothetical protein; Contains one CBS domain (IPR000644); Contains one Protein of unknown function DUF39 domain (IPR002708).
 
   
 0.973
MCP_0133
Putative ferredoxin.
 
   
 0.970
MCP_0131
Putative small neutral amino acid transporter; Belongs to the Multiple antibiotic resistance (MarC)-related proteins family (IPR002771).
       0.527
asd
Aspartate-semialdehyde dehydrogenase.
       0.473
MCP_0857
Sep-tRNA:Cys-tRNA synthase; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.
     
 0.453
comD/comE
Sulfopyruvate decarboxylase.
       0.453
MCP_2149
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0132 family (IPR005348).
       0.422
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.