STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0138CpmA homolog. (259 aa)    
Predicted Functional Partners:
MCP_2272
Belongs to the Conserved hypothetical protein 268 family (IPR005232).
  
 0.989
MCP_2271
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF111 family (IPR002822).
 
  
 0.876
MCP_2820
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF111 family (IPR002822).
 
  
 0.876
MCP_0283
Conserved hypothetical protein.
 
  
 0.825
MCP_0139
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.619
MCP_0104
Conserved hypothetical protein; Contains one Small GTP-binding protein domain (IPR005225); Belongs to the Roadblock/LC7 family (IPR004942).
     
 0.565
dtdA
D-tyrosyl-tRNA(Tyr) deacylase/cell division protein FtsZ homolog; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo; Belongs to the FtsZ family.
       0.554
MCP_1085
Putative truncated cobalamin biosynthesis protein.
 
    0.529
MCP_2311
Nicotinamide-nucleotide adenylyltransferase.
       0.512
MCP_0796
Putative cobalamin biosynthesis protein.
  
    0.459
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.