STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0147Conserved hypothetical protein. (222 aa)    
Predicted Functional Partners:
glyS
glycyl-tRNA synthetase.
       0.786
MCP_0843
Conserved hypothetical protein.
 
     0.498
cdc6-2
Cell division control protein 6 homolog; Involved in regulation of DNA replication.
  
     0.483
MCP_0149
Conserved hypothetical protein.
       0.457
MCP_2849
Putative single-stranded DNA-binding replication protein.
 
     0.454
MCP_2546
Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674).
  
     0.440
MCP_0783
Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674).
  
     0.436
MCP_1516
Archaeosine tRNA-ribosyltransferase.
 
     0.436
MCP_2814
Putative ArsR family transcriptional regulator.
  
     0.436
MCP_0870
Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674).
  
     0.412
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.