STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0165Phosphatidate cytidylyltransferase family protein. (246 aa)    
Predicted Functional Partners:
MCP_0166
Putative thymidylate kinase.
 
     0.915
MCP_0164
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF362 family (IPR007160); Contains at least one 4Fe-4S ferredoxin, iron-sulfur binding domain (IPR001450).
       0.775
MCP_2938
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF92, transmembrane family (IPR002794).
 
     0.606
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
     
 0.580
MCP_0168
Prephenate dehydrogenase.
       0.574
MCP_0163
Conserved hypothetical protein.
       0.501
MCP_2894
Putative MarR family transcriptional regulator.
 
     0.456
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.