Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_0171Putative nucleotidyl transferase. (316 aa)    
Predicted Functional Partners:
MCP_1530
Putative nucleotide sugar epimerase/dehydratase.
 
 
 0.928
MCP_0863
Putative nucleotide sugar epimerase/dehydratase.
 
 
 0.926
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
   
 0.851
ugd
UDP-glucose 6-dehydrogenase.
   
 0.840
rfbB
dTDP-glucose 4,6-dehydratase.
  
  
 0.699
MCP_0172
Putative glycosyltransferase.
     
 0.639
MCP_0173
Conserved hypothetical protein.
       0.613
aroK
Shikimate kinase.
       0.544
MCP_0169
Putative chorismate mutase.
     
 0.540
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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