Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MCP_0171 | MCP_0172 | Putative nucleotidyl transferase. | Putative glycosyltransferase. | 0.650 |
MCP_0171 | MCP_0173 | Putative nucleotidyl transferase. | Conserved hypothetical protein. | 0.613 |
MCP_0172 | MCP_0171 | Putative glycosyltransferase. | Putative nucleotidyl transferase. | 0.650 |
MCP_0172 | MCP_0173 | Putative glycosyltransferase. | Conserved hypothetical protein. | 0.773 |
MCP_0172 | MCP_0656 | Putative glycosyltransferase. | Putative glycosyltransferase. | 0.925 |
MCP_0172 | MCP_0949 | Putative glycosyltransferase. | Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173). | 0.503 |
MCP_0172 | MCP_1667 | Putative glycosyltransferase. | Conserved hypothetical protein. | 0.761 |
MCP_0172 | MCP_2279 | Putative glycosyltransferase. | Putative ATP-dependent helicase. | 0.586 |
MCP_0172 | MCP_2380 | Putative glycosyltransferase. | Putative glycoside hydrolase. | 0.626 |
MCP_0172 | MCP_2382 | Putative glycosyltransferase. | Putative glycosyltransferase. | 0.904 |
MCP_0172 | MCP_2383 | Putative glycosyltransferase. | Putative amylo-alpha-1,6-glucosidase. | 0.571 |
MCP_0172 | MCP_2698 | Putative glycosyltransferase. | Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105). | 0.508 |
MCP_0173 | MCP_0171 | Conserved hypothetical protein. | Putative nucleotidyl transferase. | 0.613 |
MCP_0173 | MCP_0172 | Conserved hypothetical protein. | Putative glycosyltransferase. | 0.773 |
MCP_0656 | MCP_0172 | Putative glycosyltransferase. | Putative glycosyltransferase. | 0.925 |
MCP_0656 | MCP_0949 | Putative glycosyltransferase. | Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173). | 0.579 |
MCP_0656 | MCP_1667 | Putative glycosyltransferase. | Conserved hypothetical protein. | 0.761 |
MCP_0656 | MCP_2279 | Putative glycosyltransferase. | Putative ATP-dependent helicase. | 0.586 |
MCP_0656 | MCP_2382 | Putative glycosyltransferase. | Putative glycosyltransferase. | 0.923 |
MCP_0656 | MCP_2698 | Putative glycosyltransferase. | Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105). | 0.508 |
page 1 of 3