Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_0172Putative glycosyltransferase. (416 aa)    
Predicted Functional Partners:
MCP_0656
Putative glycosyltransferase.
 
  
 
0.925
MCP_2382
Putative glycosyltransferase.
 
  
 
0.904
MCP_0173
Conserved hypothetical protein.
       0.773
MCP_0171
Putative nucleotidyl transferase.
     
 0.639
MCP_2380
Putative glycoside hydrolase.
 
  
 0.630
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
  
 
 0.616
MCP_2383
Putative amylo-alpha-1,6-glucosidase.
 
 
 0.581
MCP_1667
Conserved hypothetical protein.
   
 
 0.533
MCP_2279
Putative ATP-dependent helicase.
  
 
 0.451
MCP_0169
Putative chorismate mutase.
     
 0.448
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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