STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0178Hypothetical protein; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least four Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least three Tetratricopeptide TPR_2 repeats (IPR013105). (373 aa)    
Predicted Functional Partners:
MCP_0179
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279).
 
    0.816
dnaK
Heat shock protein 70; Acts as a chaperone.
  
 0.789
MCP_1774
Hypothetical protein; Contains at least one Ankyrin repeatrepeat (IPR002110); Contains at least one PBS lyase HEAT-like repeat (IPR004155).
 
 0.783
MCP_0933
Hypothetical protein; Contains at least one Ankyrin repeat (IPR002110).
 
 0.758
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
  
 
 0.735
rpoD
DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.735
MCP_0642
Putative glycosyltransferase.
  
 
 0.703
ruvB
Holliday junction ATP-dependent DNA helicase RuvB.
  
 0.701
MCP_1127
Hypothetical protein; Contains at least five WD-40 repeat repeats (IPR001680).
 0.699
MCP_1208
Hypothetical protein; Contains at least one WD-40 repeat (IPR001680).
 0.697
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.