STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pycAPutative pyruvate carboxylase subunit A. (723 aa)    
Predicted Functional Partners:
pycB
Pyruvate carboxylase subunit B.
 
 
 0.999
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.969
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
    
 0.950
acsA
acetyl-CoA synthetase.
 
 0.944
MCP_0935
Putative acyl-CoA synthetase.
 
 0.944
MCP_0939
Putative amidase.
 
  
 0.938
birA
Biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase; Bifunctional protein.
 
0.937
MCP_0446
Putative pyruvate carboxyltransferase.
  
 
 0.936
pdhA
Pyruvate dehydrogenase E1 component alpha subunit.
  
 
 0.933
gatA
glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
 
  
 0.926
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.