STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pycAPutative pyruvate carboxylase subunit A. (723 aa)    
Predicted Functional Partners:
pycB
Pyruvate carboxylase subunit B.
 
 
 0.999
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.977
acsA
acetyl-CoA synthetase.
  
 0.960
MCP_0935
Putative acyl-CoA synthetase.
  
 0.960
pdhC
Pyruvate dehydrogenase E2 component.
  
 
 0.949
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
    
 0.940
MCP_0446
Putative pyruvate carboxyltransferase.
  
 
 0.935
pdhA
Pyruvate dehydrogenase E1 component alpha subunit.
  
 
 0.934
MCP_0939
Putative amidase.
 
  
 0.933
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.925
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.