STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0211Metal dependent transcriptional regulator. (217 aa)    
Predicted Functional Partners:
MCP_0212
Ferrous iron transport protein B.
 
  
 0.855
echC
Ech hydrogenase subunit C.
    
   0.716
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
    
   0.716
rpoB2
DNA-directed RNA polymerase subunit B''; Belongs to the RNA polymerase beta chain family.
   
 
 0.578
MCP_0210
Putative glycosyltransferase.
  
    0.574
infB
Probable translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
   
   0.536
aif5A
Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
   
   0.514
MCP_0129
Putative ATP-dependent helicase.
  
 
   0.455
MCP_2274
Similar to Putative ATP-dependent helicase MTH_1802 (O27830), Putative ATP-dependent helicase MJ0294 (Q57742) and Putative ATP-dependent helicase SSO0112 (P95949).
  
 
   0.454
MCP_1079
ABC transporter permease protein.
  
  
 0.428
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.