STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0212Ferrous iron transport protein B. (647 aa)    
Predicted Functional Partners:
MCP_0211
Metal dependent transcriptional regulator.
 
  
 0.855
MCP_0210
Putative glycosyltransferase.
     
 0.556
cadA
Cadmium-transporting ATPase.
  
 
 0.488
MCP_0411
ABC transporter ATP binding protein.
     
 0.485
MCP_0410
Putative ABC transporter; Belongs to the SufBD family (IPR000825).
     
 0.447
MCP_2697
ATP-dependent Clp protease ATP-binding subunit ClpA homolog.
     
 0.443
argH
Argininosuccinate lyase.
 
   
 0.430
nrdG
Putative anaerobic ribonucleoside-triphosphate reductase-activating protein.
 
   
 0.428
MCP_1804
Putative cation transporter.
     
 0.427
secD
Putative protein-export membrane protein SecD; Involved in protein export.
     
 0.422
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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