STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0235Conserved hypothetical protein. (375 aa)    
Predicted Functional Partners:
MCP_2709
Putative glycosyltransferase.
 
  
 0.908
MCP_1930
Putative glycosyltransferase.
 
  
 0.886
MCP_0238
Putative glycosyltransferase.
 
  
 0.867
MCP_1667
Conserved hypothetical protein.
 
 
 
 0.790
MCP_0247
Putative glycosyltransferase.
 
  
 0.741
MCP_0233
Similar to peptide synthetase AdpD in Anabaena circinalis 90 (Q9K5L9).
  
  
 0.714
MCP_0232
Putative acyl-CoA synthetase.
     
 0.680
MCP_0234
Phosphopantetheinyl transferase.
     
 0.674
MCP_0231
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF849, prokaryotic family (IPR008567).
       0.629
MCP_2279
Putative ATP-dependent helicase.
  
 
 0.583
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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