Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
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Co-expression
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[Homology]
Score
MCP_0248Putative glycosyltransferase. (357 aa)    
Predicted Functional Partners:
MCP_0247
Putative glycosyltransferase.
 
  
 0.824
MCP_0245
ABC transporter ATP binding protein.
 
 
 0.810
MCP_0244
Hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216); Contains two Glycosyl transferase, family 2 domains (IPR001173).
 
  
 0.803
MCP_0246
ABC transporter permease protein.
  
  
 0.791
MCP_0243
Putative acyltransferase.
  
  
 0.643
MCP_1667
Conserved hypothetical protein.
 
 
 
 0.621
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
  
 
 0.616
MCP_0249
Conserved hypothetical protein.
       0.608
MCP_2706
Putative glycosyltransferase.
 
   
 0.550
MCP_0240
Conserved hypothetical protein.
 
     0.547
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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