STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0250Hypothetical protein. (391 aa)    
Predicted Functional Partners:
MCP_0249
Conserved hypothetical protein.
       0.618
MCP_0251
Truncated threonyl-tRNA synthetase.
  
    0.550
MCP_0248
Putative glycosyltransferase.
       0.498
MCP_0247
Putative glycosyltransferase.
       0.490
MCP_0245
ABC transporter ATP binding protein.
       0.480
MCP_0246
ABC transporter permease protein.
       0.480
MCP_0244
Hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216); Contains two Glycosyl transferase, family 2 domains (IPR001173).
       0.430
MCP_1835
Conserved hypothetical protein; Belongs to the Band 7 protein family (IPR001107); Belongs to the Stomatin family (IPR001972).
  
 
 0.428
MCP_2736
Conserved hypothetical protein.
  
 
 0.428
MCP_0243
Putative acyltransferase.
       0.409
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.