STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0256ABC transporter ATP binding protein. (245 aa)    
Predicted Functional Partners:
MCP_0255
ABC transporter permease protein.
  
 0.965
MCP_1195
ABC transporter permease protein.
  
 0.830
MCP_1197
PadR-like family transcriptional regulator.
  
  
 0.665
MCP_0564
ABC transporter permease protein.
 
  
 0.624
MCP_2632
ABC transporter permease protein.
  
 0.592
MCP_0254
Conserved hypothetical protein; Contains one Pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192); Contains one PEP-utilising enzyme, mobile region domain (IPR008279).
       0.542
MCP_0257
Putative TrmB family transcriptional regulator.
     
 0.540
MCP_0565
ABC transporter permease protein.
 
  
 0.499
MCP_2984
Putative ABC transporter; Contains one Protein of unknown function DUF214, permase predicted domain (IPR003838).
    
 0.485
MCP_2983
Putative ABC transporter; Contains one Protein of unknown function DUF214, permase predicted domain (IPR003838).
   
 0.428
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.