STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hdrD-1Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D. (347 aa)    
Predicted Functional Partners:
MCP_0281
Putative FAD linked oxidase.
  
 0.997
MCP_0283
Conserved hypothetical protein.
     0.930
MCP_0508
Similar to L(+)-tartrate dehydratase subunit beta TtdB in Escherichia coli. (P0AC35).
    
 0.917
hdrD-2
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D.
  
  
 
0.915
MCP_1139
Putative glycerol-3-phosphate dehydrogenase.
  
  
 0.915
MCP_0509
Similar to L(+)-tartrate dehydratase subunit alpha TtdB in Escherichia coli. (P05847).
    
 0.906
hdrA-1
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
     
 0.659
echF
Ech hydrogenase subunit F.
     
 0.639
hdrA-2
CoB--CoM heterodisulfide reductase iron-sulfur subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
     
 0.630
MCP_0989
Glutamate synthase.
  
  
 0.623
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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