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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0283Conserved hypothetical protein. (415 aa)    
Predicted Functional Partners:
MCP_1386
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279).
    
  0.901
MCP_2530
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279).
    
  0.901
MCP_1280
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Contains at least one Rhodanese-like domain (IPR001763).
     
  0.900
MCP_1985
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Contains at least one Rhodanese-like domain (IPR001763).
     
  0.900
MCP_2272
Belongs to the Conserved hypothetical protein 268 family (IPR005232).
 
  
 0.882
MCP_0138
CpmA homolog.
 
  
 0.877
hdrD-1
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D.
     0.876
MCP_0281
Putative FAD linked oxidase.
 
   
 0.875
MCP_2271
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF111 family (IPR002822).
 
  
 0.682
MCP_2820
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF111 family (IPR002822).
 
  
 0.623
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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