Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0311Conserved hypothetical protein. (449 aa)    
Predicted Functional Partners:
MCP_0320
Conserved hypothetical protein.
  
 
 0.988
MCP_0321
Conserved hypothetical protein; Belongs to the Phage baseplate assembly predicted J-like family (IPR006949).
 
 
 0.983
MCP_0318
Hypothetical protein.
 
   
 0.838
MCP_0312
Conserved hypothetical protein.
       0.792
MCP_0313
Conserved hypothetical protein.
       0.718
MCP_0314
Conserved hypothetical protein.
       0.713
MCP_1481
Hypothetical protein.
  
     0.548
MCP_0315
Hypothetical protein.
       0.519
MCP_0316
Hypothetical protein; Contains two Bacterial Ig-like, group 1 domains (IPR003344).
       0.519
MCP_0326
Hypothetical protein; Contains at least one Cna B-type domain (IPR008454).
 
    0.515
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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