STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0325Hypothetical protein; Contains at least one Bacterial Ig-like, group 1 domain (IPR003344); Contains at least one Cna B-type domain (IPR008454). (1313 aa)    
Predicted Functional Partners:
MCP_0326
Hypothetical protein; Contains at least one Cna B-type domain (IPR008454).
      
0.773
MCP_2798
Hypothetical protein; Contains two Na-Ca exchanger/integrin-beta4 domains (IPR003644).
  
     0.660
MCP_1825
Hypothetical protein; Contains two Na-Ca exchanger/integrin-beta4 domains (IPR003644).
 
     0.634
rps24e
30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
 
     0.574
ala
Alanine dehydrogenase; Catalyzes the NAD(+)-dependent oxidative deamination of L- alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate; Belongs to the ornithine cyclodeaminase/mu-crystallin family. Archaeal alanine dehydrogenase subfamily.
 
     0.549
MCP_0983
Conserved hypothetical protein; Contains one Dual specificity protein phosphatase domain (IPR000340).
  
     0.489
MCP_2015
Conserved hypothetical protein; Contains at least one Tetratricopeptide TPR_1 repeat (IPR001440).
 
     0.468
MCP_2385
Hypothetical protein.
 
     0.448
MCP_0572
Hypothetical protein; Contains at least one PT repeat (IPR006970).
  
     0.411
top6A-1
Type II DNA topoisomerase VI subunit A.
 
     0.403
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.