STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
alaAlanine dehydrogenase; Catalyzes the NAD(+)-dependent oxidative deamination of L- alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate; Belongs to the ornithine cyclodeaminase/mu-crystallin family. Archaeal alanine dehydrogenase subfamily. (325 aa)    
Predicted Functional Partners:
MCP_2159
Similar to alpha-aminoadipate aminotransferase LysN in Thermus thermophilus (Q7X567).
    
 0.927
pdhB
Pyruvate dehydrogenase E1 component beta subunit.
  
 
  0.813
pycA
Putative pyruvate carboxylase subunit A.
    
  0.810
pdhA
Pyruvate dehydrogenase E1 component alpha subunit.
  
 
  0.808
MCP_1257
Similar to Ketoisovalerate oxidoreductase alpha chain VorA in Pyrococcus furiosus (Q51801).
    
 0.807
MCP_2613
Similar to Pyruvate synthase alpha chain PorA in Pyrococcus furiosus (Q51804).
    
 0.807
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.804
pycB
Pyruvate carboxylase subunit B.
    
  0.802
MCP_0433
Aspartate racemase.
    
  0.802
MCP_1255
Pyruvate synthase delta chain; Similar to Ketoisovalerate oxidoreductase delta subunit VorB in Pyrococcus furiosus (Q51800).
    
  0.802
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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