STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0329Putative transcriptional regulator. (251 aa)    
Predicted Functional Partners:
MCP_0027
Conserved hypothetical protein; Contains one Cobalamin vitamin B12-binding domain (IPR006158); Contains one Elongator protein 3/MiaB/NifB domain (IPR006638).; Contains one Radical SAM domain (IPR007197).
  
  
 0.712
MCP_0090
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0004 family (IPR005839); Contains one Cobalamin vitamin B12-binding domain (IPR006158).; Contains one Elongator protein 3/MiaB/NifB domain (IPR006638).; Contains one Radical SAM domain (IPR007197).
  
  
 0.712
MCP_1489
Conserved hypothetical protein.
  
  
 0.712
MCP_0104
Conserved hypothetical protein; Contains one Small GTP-binding protein domain (IPR005225); Belongs to the Roadblock/LC7 family (IPR004942).
 
   
 0.669
MCP_2598
NADH oxidase.
  
  
 0.623
MCP_1672
Conserved hypothetical protein.
 
  
 0.599
MCP_0831
Putative phosphoesterase; Belongs to the Protein of unknown function UPF0025 family (IPR000979).
     
 0.568
MCP_0362
Conserved hypothetical protein.
 
   
 0.540
MCP_0267
Conserved hypothetical protein; Contains one Phosphate acetyl/butaryl transferase domain (IPR002505); Similar to Putative methyltransferase mtx subunit X in Methanosarcina barkeri (strain Fusaro / DSM 804) (O32853).
  
     0.535
MCP_1245
Putative TrmB family transcriptional regulator.
 
   
 0.517
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.