STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0356Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279). (286 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
   
 
 0.695
MCP_0355
Conserved hypothetical protein; Contains one Cupin 2, conserved barrel domain (IPR013096).
 
   
 0.653
rps17p
30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.608
rpl37e
50S ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
  
   0.607
MCP_1280
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Contains at least one Rhodanese-like domain (IPR001763).
  
 
 0.576
MCP_1985
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Contains at least one Rhodanese-like domain (IPR001763).
  
 
 0.576
MCP_0752
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
  
 
 0.569
MCP_1483
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
  
 
 0.569
MCP_1723
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
  
 
 0.569
MCP_1813
Conserved hypothetical protein; Contains one Rhodanese-like domain (IPR001763).
  
 
 0.569
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.