STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0371Putative TatD deoxyribonuclease. (277 aa)    
Predicted Functional Partners:
rpl40e
50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
 
     0.693
MCP_1019
Putative single-stranded DNA-binding replication protein.
  
     0.646
MCP_0206
Conserved hypothetical protein; Belongs to the NMD3 family (IPR007064).
 
     0.632
MCP_1515
Belongs to the Conserved hypothetical protein 1210 family (IPR005909).
  
     0.606
MCP_2746
Putative HTH-type transcriptional regulator.
  
     0.600
MCP_1018
Conserved hypothetical protein.
 
     0.590
rpl39e
50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.587
MCP_2065
Belongs to the Uncharacterised conserved protein UCP015877, zinc finger family (IPR012041).
  
     0.553
MCP_0372
Conserved hypothetical protein.
       0.541
MCP_2850
Conserved hypothetical protein.
  
     0.537
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.