STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0384Copper-transporting P-type ATPase. (817 aa)    
Predicted Functional Partners:
MCP_0385
Conserved hypothetical protein; Contains one Rieske [2Fe-2S] regiondomain (IPR005806).
     
 0.764
cadA
Cadmium-transporting ATPase.
 
   
0.712
MCP_0687
ArsR family transcriptional regulator.
  
  
 0.681
MCP_1371
ArsR family transcriptional regulator.
  
  
 0.681
MCP_1056
Putative heavy metal transport/detoxification protein.
     
 0.671
MCP_2756
Putative heavy metal transport/detoxification protein.
     
 0.671
MCP_0404
Conserved hypothetical protein; Contains one YHS domain (IPR007029); Contains one TRASH domain (IPR011017).
     
 0.608
trxA
Thioredoxin.
     
 0.592
echB
Ech hydrogenase subunit B.
     
 0.416
MCP_1863
Molybdate ABC transporter molybdate binding protein precursor.
     
 0.416
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.