STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0401Putative ABC transporter. (306 aa)    
Predicted Functional Partners:
MCP_2523
ABC transporter ATP binding protein.
 
 
 0.971
MCP_2522
ABC transporter permease protein.
 
 
 0.969
comD/comE
Sulfopyruvate decarboxylase.
 
    0.670
MCP_0431
Putative nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.620
MCP_0586
Putative nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.620
MCP_0588
Putative nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.620
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of IMP that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. Archaeal HPRT subfamily.
     
 0.610
MCP_0402
Belongs to the Uncharacterised conserved protein UCP004929 family (IPR009181).
       0.566
MCP_2520
Putative HTH-type transcriptional regulator.
       0.524
MCP_1758
ABC transporter substrate binding protein.
  
     0.494
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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