STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0401Putative ABC transporter. (306 aa)    
Predicted Functional Partners:
MCP_2522
ABC transporter permease protein.
 
  
 0.831
MCP_2523
ABC transporter ATP binding protein.
 
  
 0.831
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of IMP that is energically less costly than de novo synthesis. Belongs to the purine/pyrimidine phosphoribosyltransferase family. Archaeal HPRT subfamily.
       0.608
comD/comE
Sulfopyruvate decarboxylase.
 
    0.599
MCP_0402
Belongs to the Uncharacterised conserved protein UCP004929 family (IPR009181).
       0.566
MCP_1358
Putative phosphoadenosine phosphosulfate reductase.
  
  
 0.522
MCP_2903
Putative NADPH:quinone oxidoreductase.
  
  
 0.501
MCP_0329
Putative transcriptional regulator.
 
  
 0.500
MCP_1758
ABC transporter substrate binding protein.
  
     0.494
MCP_0397
Conserved hypothetical protein; Contains one Helix-turn-helix type 3 domain (IPR001387).
  
    0.477
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.