STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0403Peptidase S8 family protein; Belongs to the peptidase S8 family. (499 aa)    
Predicted Functional Partners:
MCP_0487
Conserved hypothetical protein; Contains at least two Regulator of chromosome condensation, RCC1 repeats (IPR000408).
 
 
 0.766
MCP_1625
Hypothetical protein; Contains four Regulator of chromosome condensation, RCC1 repeats (IPR000408).
 
 
 0.766
MCP_2552
TraB family protein.
   
   0.657
MCP_0404
Conserved hypothetical protein; Contains one YHS domain (IPR007029); Contains one TRASH domain (IPR011017).
       0.496
MCP_0233
Similar to peptide synthetase AdpD in Anabaena circinalis 90 (Q9K5L9).
 
 
 0.418
MCP_0402
Belongs to the Uncharacterised conserved protein UCP004929 family (IPR009181).
       0.411
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
 
 
 0.411
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.