STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0410Putative ABC transporter; Belongs to the SufBD family (IPR000825). (410 aa)    
Predicted Functional Partners:
MCP_0411
ABC transporter ATP binding protein.
 
 0.999
csd
Putative cysteine desulfurase.
 
 0.998
MCP_0409
Putative iron sulfur cluster assembly protein.
  
  
 0.958
MCP_0101
Conserved hypothetical protein; Belongs to the HesB/YadR/YfhF family (IPR000361).
  
 
 0.858
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
    0.509
MCP_2397
Conserved hypothetical protein.
 
   
 0.478
MCP_0212
Ferrous iron transport protein B.
     
 0.447
MCP_0384
Copper-transporting P-type ATPase.
     
 0.445
infB
Probable translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
     
 0.439
dnaK
Heat shock protein 70; Acts as a chaperone.
  
  
 0.420
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.