Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_0410Putative ABC transporter; Belongs to the SufBD family (IPR000825). (410 aa)    
Predicted Functional Partners:
MCP_0411
ABC transporter ATP binding protein.
 
 0.999
csd
Putative cysteine desulfurase.
 
 0.989
MCP_0409
Putative iron sulfur cluster assembly protein.
  
  
 0.947
MCP_0101
Conserved hypothetical protein; Belongs to the HesB/YadR/YfhF family (IPR000361).
  
 
 0.657
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
    0.508
MCP_0803
Phosphomannomutase/phosphoglucomutase; Bifunctional protein; Belongs to the phosphohexose mutase family.
     
 0.495
MCP_2978
Putative flavoprotein.
  
    0.457
MCP_2397
Conserved hypothetical protein.
 
   
 0.422
tatC-2
Putative sec-independent translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
     
 0.413
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
  
 0.408
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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