STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdAacetyl-CoA synthetase alpha subunit. (458 aa)    
Predicted Functional Partners:
acdB
acetyl-CoA synthetase beta subunit.
 
 0.999
MCP_2918
acetyl-CoA synthetase.
 
 
0.969
acsA
acetyl-CoA synthetase.
    
 0.921
MCP_0935
Putative acyl-CoA synthetase.
    
 0.921
MCP_2748
acyl-CoA C-acyltransferases.
  
 
 0.917
pdhC
Pyruvate dehydrogenase E2 component.
  
 
 0.909
aksA
Homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
    
 0.904
MCP_2808
Putative 2-isopropylmalate synthase.
    
 0.904
MCP_2687
Putative acylphosphatase.
    
 0.901
pycB
Pyruvate carboxylase subunit B.
    
 0.834
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.