tatA protein (Methanocella paludicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tatA

Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (109 aa)

Predicted Functional Partners:

tatC-1

0.965

tatC-2

0.965

MCP_1559

0.905

MCP_0377

0.837

guaAB

0.639

guaAA

0.639

MCP_0459

0.580

moeA-1

0.471

MCP_2364

0.401

MCP_0401

0.400

Your Current Organism:

Methanocella paludicola

NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCP_0377	MCP_1559	MCP_0377	MCP_1559	Peptidase S54, rhomboid family protein; Contains one Zinc finger, AN1-type domain (IPR000058).	Putative sec-independent translocase protein.	0.837
MCP_0377	tatA	MCP_0377	MCP_0460	Peptidase S54, rhomboid family protein; Contains one Zinc finger, AN1-type domain (IPR000058).	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.837
MCP_0401	tatA	MCP_0401	MCP_0460	Putative ABC transporter.	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.400
MCP_0459	tatA	MCP_0459	MCP_0460	Hypothetical protein.	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.580
MCP_1559	MCP_0377	MCP_1559	MCP_0377	Putative sec-independent translocase protein.	Peptidase S54, rhomboid family protein; Contains one Zinc finger, AN1-type domain (IPR000058).	0.837
MCP_1559	guaAA	MCP_1559	MCP_2846	Putative sec-independent translocase protein.	GMP synthase [glutamine-hydrolyzing] subunit A; Catalyzes the synthesis of GMP from XMP.	0.639
MCP_1559	guaAB	MCP_1559	MCP_0413	Putative sec-independent translocase protein.	GMP synthase [glutamine-hydrolyzing] subunit B; Catalyzes the synthesis of GMP from XMP.	0.639
MCP_1559	moeA-1	MCP_1559	MCP_2799	Putative sec-independent translocase protein.	Putative molybdopterin biosynthesis protein.	0.471
MCP_1559	tatA	MCP_1559	MCP_0460	Putative sec-independent translocase protein.	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.905
MCP_1559	tatC-1	MCP_1559	MCP_0142	Putative sec-independent translocase protein.	Putative sec-independent translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.	0.949
MCP_1559	tatC-2	MCP_1559	MCP_2945	Putative sec-independent translocase protein.	Putative sec-independent translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.	0.949
MCP_2364	tatA	MCP_2364	MCP_0460	Putative M24B family peptidase; Belongs to the peptidase M24B family.	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.401
guaAA	MCP_1559	MCP_2846	MCP_1559	GMP synthase [glutamine-hydrolyzing] subunit A; Catalyzes the synthesis of GMP from XMP.	Putative sec-independent translocase protein.	0.639
guaAA	guaAB	MCP_2846	MCP_0413	GMP synthase [glutamine-hydrolyzing] subunit A; Catalyzes the synthesis of GMP from XMP.	GMP synthase [glutamine-hydrolyzing] subunit B; Catalyzes the synthesis of GMP from XMP.	0.997
guaAA	tatA	MCP_2846	MCP_0460	GMP synthase [glutamine-hydrolyzing] subunit A; Catalyzes the synthesis of GMP from XMP.	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.639
guaAB	MCP_1559	MCP_0413	MCP_1559	GMP synthase [glutamine-hydrolyzing] subunit B; Catalyzes the synthesis of GMP from XMP.	Putative sec-independent translocase protein.	0.639
guaAB	guaAA	MCP_0413	MCP_2846	GMP synthase [glutamine-hydrolyzing] subunit B; Catalyzes the synthesis of GMP from XMP.	GMP synthase [glutamine-hydrolyzing] subunit A; Catalyzes the synthesis of GMP from XMP.	0.997
guaAB	tatA	MCP_0413	MCP_0460	GMP synthase [glutamine-hydrolyzing] subunit B; Catalyzes the synthesis of GMP from XMP.	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.639
moeA-1	MCP_1559	MCP_2799	MCP_1559	Putative molybdopterin biosynthesis protein.	Putative sec-independent translocase protein.	0.471
moeA-1	tatA	MCP_2799	MCP_0460	Putative molybdopterin biosynthesis protein.	Putative sec-independent translocase protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.471

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About