STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echFEch hydrogenase subunit F. (145 aa)    
Predicted Functional Partners:
MCP_2640
Putative [NiFe]-hydrogenase large subunit.
 
 0.998
echA
Ech hydrogenase subunit A.
 
 
 0.995
echD
Ech hydrogenase subunit D.
  
 0.991
echB
Ech hydrogenase subunit B.
 
 
 0.991
MCP_2639
Putative hydrogenase membrane component.
  
 0.991
echC
Ech hydrogenase subunit C.
 
 
 0.985
echE
Ech hydrogenase subunit E.
 
 
 0.967
MCP_2685
Putative NADH:ubiquinone dehydrogenase.
  
 
 0.933
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
 
 
 0.874
MCP_0523
[NiFe]-hydrogenase large subunit; Similar to Ech hydrogenase, subunit EchE in Methanosarcina barkeri (O59656).
 
 
 0.860
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.