STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echBEch hydrogenase subunit B. (299 aa)    
Predicted Functional Partners:
MCP_2640
Putative [NiFe]-hydrogenase large subunit.
 
 
 0.999
echC
Ech hydrogenase subunit C.
 
 
 0.998
echE
Ech hydrogenase subunit E.
 
 
 0.993
echF
Ech hydrogenase subunit F.
 
 
 0.992
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
 
 
 0.991
echA
Ech hydrogenase subunit A.
   
 0.983
MCP_0523
[NiFe]-hydrogenase large subunit; Similar to Ech hydrogenase, subunit EchE in Methanosarcina barkeri (O59656).
 
 
 0.972
MCP_2638
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 
 0.958
echD
Ech hydrogenase subunit D.
  
 
 0.955
MCP_0617
4Fe-4S ferredoxin, iron-sulfur binding protein.
  
 
 0.820
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.