STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0483Phosphoglycolate phosphatase. (219 aa)    
Predicted Functional Partners:
MCP_0484
Putative glycoside hydrolase.
       0.645
echF
Ech hydrogenase subunit F.
 
  
 0.610
MCP_1139
Putative glycerol-3-phosphate dehydrogenase.
     
 0.571
echE
Ech hydrogenase subunit E.
       0.535
echC
Ech hydrogenase subunit C.
       0.535
echB
Ech hydrogenase subunit B.
       0.535
echD
Ech hydrogenase subunit D.
       0.530
echA
Ech hydrogenase subunit A.
       0.530
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.