STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0483Phosphoglycolate phosphatase. (219 aa)    
Predicted Functional Partners:
MCP_0484
Putative glycoside hydrolase.
       0.651
echF
Ech hydrogenase subunit F.
 
    0.615
echB
Ech hydrogenase subunit B.
       0.545
echE
Ech hydrogenase subunit E.
       0.536
echD
Ech hydrogenase subunit D.
       0.536
echC
Ech hydrogenase subunit C.
       0.536
echA
Ech hydrogenase subunit A.
       0.536
MCP_0273
Putative nucleotidyl transferase.
  
  
 0.446
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
  
 0.415
MCP_1139
Putative glycerol-3-phosphate dehydrogenase.
     
 0.411
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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