STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0484Putative glycoside hydrolase. (586 aa)    
Predicted Functional Partners:
MCP_0483
Phosphoglycolate phosphatase.
       0.645
fgd
Similar to F420-dependent alcohol dehydrogenase Adf in Methanofollis liminatans (O93735) and Methanoculleus thermophilus (O93734).
 
     0.582
dphB
Probable diphthine synthase; S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.
 
      0.537
echF
Ech hydrogenase subunit F.
     
 0.452
echD
Ech hydrogenase subunit D.
       0.446
echA
Ech hydrogenase subunit A.
       0.446
echB
Ech hydrogenase subunit B.
       0.445
echE
Ech hydrogenase subunit E.
       0.440
echC
Ech hydrogenase subunit C.
       0.440
MCP_2266
Putative 6-phosphogluconate dehydrogenase.
 
     0.414
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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