STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0487Conserved hypothetical protein; Contains at least two Regulator of chromosome condensation, RCC1 repeats (IPR000408). (444 aa)    
Predicted Functional Partners:
rpl40e
50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
    
 0.803
MCP_1283
Putative subtilisin; Belongs to the peptidase S8 family.
 
 
 0.799
MCP_2802
Peptidase S8 family protein; Belongs to the peptidase S8 family.
 
 
 0.792
MCP_1437
Peptidase S8 family protein; Belongs to the peptidase S8 family.
 
 
 0.782
MCP_0403
Peptidase S8 family protein; Belongs to the peptidase S8 family.
 
 
 0.766
MCP_1103
Hypothetical protein.
  
 
 0.766
MCP_2069
Peptidase S8 family protein; Belongs to the peptidase S8 family.
 
 
 0.766
MCP_2552
TraB family protein.
    
   0.742
MCP_2698
Protein kinase; Contains at least one Tetratricopeptide region domain (IPR013026); Contains at least three Tetratricopeptide TPR_1 repeats (IPR001440).; Contains at least five Tetratricopeptide TPR_2repeats (IPR013105).
  
 0.729
MCP_0187
Peptidyl-prolyl cis-trans isomerase.
   
 0.658
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.