Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCP_0489Putative aspartate aminotransferase. (397 aa)    
Predicted Functional Partners:
MCP_0490
AsnC/Lrp family transcriptional regulator.
 
   
 0.966
pheA
Prephenate dehydratase.
 
  
 0.901
rps8e
30S ribosomal protein S8e.
     
 0.572
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
  
 
 0.561
pycA
Putative pyruvate carboxylase subunit A.
  
  
 0.559
cdc6-1
Cell division control protein 6 homolog; Involved in regulation of DNA replication.
       0.529
MCP_0491
Archaeal histone.
     
 0.505
MCP_0488
Putative small-conductance mechanosensitive channel.
  
    0.501
MCP_2513
Aspartate kinase; Belongs to the aspartokinase family.
  
  
 0.451
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.425
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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