STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0492Putative transcriptional regulator; Contains an extra Cystathionine-beta-synthase domain (IPR000644) in the C-terminal region. (185 aa)    
Predicted Functional Partners:
MCP_0493
Conserved hypothetical protein.
     
 0.521
MCP_2872
Conserved hypothetical protein; Contains two CBS domains (IPR000644).
 
   
 0.512
MCP_1760
DNA repair helicase.
 
    0.460
MCP_1251
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF424 family (IPR007355).
  
     0.443
MCP_1759
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF790, endonuclease-like family (IPR008508).
  
     0.438
MCP_1554
Conserved hypothetical protein; Contains one N-6 Adenine-specific DNA methylase domain (IPR002052).
 
   
 0.420
MCP_1516
Archaeosine tRNA-ribosyltransferase.
 
     0.416
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.409
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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