STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0492Putative transcriptional regulator; Contains an extra Cystathionine-beta-synthase domain (IPR000644) in the C-terminal region. (185 aa)    
Predicted Functional Partners:
aspC-2
Aspartate aminotransferase.
       0.577
ribC
Riboflavin synthase.
       0.544
MCP_0920
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF555 family (IPR007564).
       0.536
MCP_0493
Conserved hypothetical protein.
       0.521
MCP_2872
Conserved hypothetical protein; Contains two CBS domains (IPR000644).
 
   
 0.483
MCP_0625
Putative S-adenosylmethionine synthetase.
 
     0.477
MCP_1760
DNA repair helicase.
 
    0.465
MCP_2279
Putative ATP-dependent helicase.
       0.462
pth
peptidyl-tRNA hydrolase.
       0.444
MCP_1251
Conserved hypothetical protein; Belongs to the Protein of unknown function DUF424 family (IPR007355).
  
     0.443
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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