STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0508Similar to L(+)-tartrate dehydratase subunit beta TtdB in Escherichia coli. (P0AC35). (193 aa)    
Predicted Functional Partners:
MCP_0509
Similar to L(+)-tartrate dehydratase subunit alpha TtdB in Escherichia coli. (P05847).
 
 0.999
hdrD-1
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D.
    
 0.919
hdrD-2
Putative CoB--CoM heterodisulfide reductase iron-sulfur subunit D.
    
 0.917
argH
Argininosuccinate lyase.
    
 0.846
MCP_1113
Putative aspartate aminotransferase.
    
 0.813
aspC-1
Aspartate aminotransferase.
    
 0.813
MCP_2371
Putative cyclase.
    
  0.802
MCP_0506
Conserved hypothetical protein.
       0.705
MCP_0507
Conserved hypothetical protein.
       0.705
pycB
Pyruvate carboxylase subunit B.
     
 0.694
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.