STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
MCP_0517Putative dTDP-4-dehydrorhamnose 3,5-epimerase. (159 aa)    
Predicted Functional Partners:
rfbB
dTDP-glucose 4,6-dehydratase.
  
 
 0.986
MCP_2071
Putative dTDP-4-dehydrorhamnose reductase.
 
 
 0.980
rfbD
dTDP-4-dehydrorhamnose reductase.
  
 
 0.977
MCP_0949
Hypothetical protein; Contains one UDP-glucose/GDP-mannose dehydrogenase domain (IPR001732); Contains one Glycosyl transferase, family 2 domain (IPR001173).
  
  
 0.936
MCP_2720
Putative nucleotide sugar epimerase/dehydratase.
  
 
 0.926
MCP_0273
Putative nucleotidyl transferase.
  
  
 0.923
rfbC
Putative dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 
0.901
rfbA
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.890
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.763
MCP_0244
Hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216); Contains two Glycosyl transferase, family 2 domains (IPR001173).
  
  
 0.729
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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