STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0519Conserved hypothetical protein; Belongs to the Protein of unknown function DUF134 family (IPR002852). (164 aa)    
Predicted Functional Partners:
atw-1
Putative methylcoenzyme M reductase system component A2.
  
    0.888
MCP_0520
Conserved hypothetical protein; Contains one Dinitrogenase iron-molybdenum cofactor biosynthesis domain (IPR003731).
 
  
 0.876
MCP_0521
Nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
    0.781
MCP_0525
Conserved hypothetical protein; Contains one Dinitrogenase iron-molybdenum cofactor biosynthesis domain (IPR003731).
 
  
 0.762
MCP_0523
[NiFe]-hydrogenase large subunit; Similar to Ech hydrogenase, subunit EchE in Methanosarcina barkeri (O59656).
       0.749
MCP_0524
Hypothetical protein.
       0.749
MCP_0528
Conserved hypothetical protein; Contains one Dinitrogenase iron-molybdenum cofactor biosynthesis domain (IPR003731).
 
  
 0.699
MCP_0526
Conserved hypothetical protein; Contains one Cobyrinic acid a,c-diamide synthase domain (IPR002586); Contains two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
 
     0.641
MCP_0527
Conserved hypothetical protein; Contains one Cobyrinic acid a,c-diamide synthase domain (IPR002586); Contains two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
 
     0.635
pdaD-1
Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
       0.620
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.