STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trkA-1Trk system potassium uptake protein TrkA homolog. (222 aa)    
Predicted Functional Partners:
MCP_0548
Trk system potassium uptake protein.
 
 
 0.991
MCP_2505
Trk system potassium uptake protein.
 
 
 0.965
MCP_2421
Molybdopterin-guanine dinucleotide biosynthesis MobB/molybdopterin biosynthesis MoaE; Bifunctional protein.
  
    0.708
hemD
uroporphyrinogen-III synthase.
  
    0.667
MCP_1060
Conserved hypothetical protein; Belongs to the UPF0288 family.
   
    0.660
MCP_0857
Sep-tRNA:Cys-tRNA synthase; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.
   
    0.606
MCP_1491
Amino acid transporter.
  
  
 0.575
MCP_1966
Amino acid transporter; Contains two UspA domains (IPR006016).
  
  
 0.575
MCP_0550
Belongs to the Uncharacterised conserved protein UCP016937 family (IPR008303).
  
    0.551
MCP_0551
Conserved hypothetical protein.
       0.521
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.