Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCP_0551Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
MCP_0550
Belongs to the Uncharacterised conserved protein UCP016937 family (IPR008303).
       0.777
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
       0.582
MCP_0548
Trk system potassium uptake protein.
       0.521
trkA-1
Trk system potassium uptake protein TrkA homolog.
       0.521
MCP_2513
Aspartate kinase; Belongs to the aspartokinase family.
       0.466
metE
Putative methylcobalamin:homocysteine methyltransferase.
       0.439
MCP_0552
Conserved hypothetical protein.
       0.430
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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