STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0555Conserved hypothetical protein; Contains one TfuA-like, core domain (IPR012924). (217 aa)    
Predicted Functional Partners:
MCP_0554
Conserved hypothetical protein; Contains one YcaO_like domain (IPR003776).
  
 0.981
MCP_0553
Conserved hypothetical protein.
       0.542
MCP_0362
Conserved hypothetical protein.
  
     0.530
MCP_2556
Conserved hypothetical protein; Belongs to the tRNAHis guanylyltransferase family (IPR007537).
  
     0.489
MCP_0363
Conserved hypothetical protein.
  
     0.488
MCP_0556
Conserved hypothetical protein.
       0.423
MCP_0329
Putative transcriptional regulator.
  
     0.409
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.