STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0558Conserved hypothetical protein; Contains one 40-residue YVTN beta-propeller repeat (IPR011964). (396 aa)    
Predicted Functional Partners:
MCP_1284
Copper binding protein.
   
   0.722
MCP_1782
Copper binding protein.
   
   0.722
MCP_2840
Copper binding protein.
   
   0.722
MCP_2841
Copper binding protein.
   
   0.722
MCP_0557
Conserved hypothetical protein.
       0.547
MCP_0326
Hypothetical protein; Contains at least one Cna B-type domain (IPR008454).
  
     0.504
MCP_2388
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
  
 0.461
MCP_0885
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
  
 0.454
MCP_0884
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
  
 0.400
MCP_2725
Conserved hypothetical protein; Contains one Radical SAMdomain (IPR007197).
 
  
 0.400
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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