STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_06174Fe-4S ferredoxin, iron-sulfur binding protein. (138 aa)    
Predicted Functional Partners:
MCP_0618
Tungsten-containing aldehyde ferredoxin oxidoreductase.
 
 
 
 0.975
MCP_2640
Putative [NiFe]-hydrogenase large subunit.
  
 
 0.917
MCP_0658
Tungsten-containing aldehyde ferredoxin oxidoreductase.
 
 
 
 0.894
echC
Ech hydrogenase subunit C.
  
 
 0.832
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
  
 
 0.832
echE
Ech hydrogenase subunit E.
  
 
 0.828
MCP_0523
[NiFe]-hydrogenase large subunit; Similar to Ech hydrogenase, subunit EchE in Methanosarcina barkeri (O59656).
  
 
 0.828
echB
Ech hydrogenase subunit B.
  
 
 0.820
MCP_1258
Pyruvate synthase beta chain; Similar to Ketoisovalerate oxidoreductase beta VorB in Pyrococcus furiosus (Q51802).
  
  
 0.812
MCP_2614
Similar to Pyruvate synthase beta chain PorB in Pyrococcus furiosus (Q51805).
  
  
 0.812
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.