STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0618Tungsten-containing aldehyde ferredoxin oxidoreductase. (634 aa)    
Predicted Functional Partners:
MCP_0617
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 
 
 0.980
MCP_0658
Tungsten-containing aldehyde ferredoxin oxidoreductase.
 
  
 
0.909
MCP_1988
Putative glycerate kinase.
    
  0.901
MCP_2644
4Fe-4S ferredoxin, iron-sulfur binding protein.
 
 
 0.881
moeA-1
Putative molybdopterin biosynthesis protein.
 
   
 0.794
MCP_2665
ABC transporter permease protein.
 
   
 0.721
MCP_1732
Sulfite reductase.
  
 
 0.663
MCP_0619
Putative glutaredoxin.
       0.613
MCP_2804
ABC transporter permease protein.
 
   
 0.610
echF
Ech hydrogenase subunit F.
  
   0.575
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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