STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0689Putative methyltransferase. (271 aa)    
Predicted Functional Partners:
MCP_2981
GCN5-related N-acetyltransferase family protein.
    0.921
MCP_2011
GCN5-related N-acetyltransferase family protein.
 
      0.900
MCP_2056
Putative metal-dependent phosphohydrolase.
 
      0.761
MCP_0688
Hypothetical protein.
       0.737
MCP_0687
ArsR family transcriptional regulator.
     
 0.656
MCP_2388
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
      0.637
MCP_1162
Putative methyltransferase.
  
     0.618
MCP_0884
Conserved hypothetical protein; Contains one Radical SAM domain (IPR007197).
 
      0.570
MCP_2455
Conserved hypothetical protein; Contains one Methyltransferase type 11 domain (IPR013216).
 
   
 0.568
MCP_0462
Putative methyltransferase.
  
     0.471
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.