STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0715Conserved hypothetical protein; Contains one Protein of unknown function DUF362 domain (IPR007160). (277 aa)    
Predicted Functional Partners:
MCP_1336
Conserved hypothetical protein; Contains one Protein of unknown function DUF362 domain (IPR007160).
  
     0.643
MCP_1337
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279); Belongs to the UPF0173 family.
 
      0.623
MCP_0714
Conserved hypothetical protein.
       0.605
MCP_2463
Conserved hypothetical protein; Contains one Protein of unknown function DUF362 domain (IPR007160).
  
     0.559
MCP_0080
Conserved hypothetical protein; Contains at least two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
 
   
 0.543
MCP_0716
Conserved hypothetical protein.
       0.506
MCP_0274
Conserved hypothetical protein; Contains two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
 
     0.479
MCP_0784
Conserved hypothetical protein; Contains two Protein of unknown function DUF362 domains (IPR007160).
  
     0.433
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.