STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0799Metal dependent transcriptional regulator. (143 aa)    
Predicted Functional Partners:
MCP_0798
Putative cobalt ABC transporter permease protein.
     
 0.791
MCP_0797
Putative cobalt ABC transporter ATP binding protein.
  
    0.758
MCP_2637
Putative [NiFe]-hydrogenase small subunit.
   
   0.718
echC
Ech hydrogenase subunit C.
    
   0.716
MCP_0796
Putative cobalamin biosynthesis protein.
     
 0.663
MCP_0795
Conserved hypothetical protein.
       0.629
MCP_0800
Conserved hypothetical protein.
       0.548
MCP_1079
ABC transporter permease protein.
  
  
 0.459
MCP_1080
ABC transporter ATP binding protein.
  
  
 0.453
MCP_0475
Putative response regulator.
 
 
 0.431
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.